STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3173PPK2 domain-containing protein; Homologs of previously reported genes of unknown function. (332 aa)    
Predicted Functional Partners:
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.958
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
    
 0.913
XM1_3171
Protein of unknown function; No homology to any previously reported sequences.
       0.591
XM1_3172
UPF0114 protein XM1_3172; Homologs of previously reported genes of unknown function.
       0.570
gloA
Glyoxalase I, Ni-dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.552
XM1_0113
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
      
 0.549
phoB
Two-component system, OmpR family, phosphate regulon response regulator PhoB; Function of homologous gene experimentally demonstrated in an other organism; regulator.
      
 0.549
ompR
DNA-binding response regulator in two-component regulatory system with EnvZ; Function of homologous gene experimentally demonstrated in an other organism; regulator.
      
 0.532
ompR-3
Transcriptional regulatory protein OmpR; Function of strongly homologous gene; regulator.
      
 0.532
ppiC
Peptidyl-prolyl cis-trans isomerase C (rotamase C); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.506
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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