STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3188PG_binding_1 domain-containing protein; Homologs of previously reported genes of unknown function. (287 aa)    
Predicted Functional Partners:
XM1_0048
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
  
    0.682
XM1_4064
Conserved protein of unknown function (DNA binding 12-129); Homologs of previously reported genes of unknown function.
  
    0.667
XM1_3196
Protein of unknown function; No homology to any previously reported sequences.
  
    0.655
XM1_0066
Conserved protein of unknown function（Phage-related protein） Homologs of previously reported genes of unknown function.
  
    0.596
XM1_2596
Putative Phage-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.596
ydfG
L-allo-threonine dehydrogenase, NAD(P)-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.595
XM1_0058
Putative Phage-related minor tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
    0.589
XM1_2602
Putative Phage-related minor tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
    0.589
mazG
Nucleoside triphosphate pyrophosphohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.579
XM1_3185
Protein of unknown function; No homology to any previously reported sequences.
       0.566
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.