STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3219DSBA domain-containing protein; Homologs of previously reported genes of unknown function. (215 aa)    
Predicted Functional Partners:
XM1_3218
Putative Response regulator/GGDEF domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.800
yfgD
oxidoreductase（Arsenate reductase,5-115） Function of strongly homologous gene; enzyme.
   
 
 0.671
XM1_3935
Putative Arsenate reductase (nitrogenase-associated protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the ArsC family.
   
 
 0.671
XM1_2695
Putative NADPH:quinone oxidoreductase 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.608
XM1_3217
Putative branched-chain amino acid ABC transporter, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
   0.579
ribB
Riboflavin biosynthesis protein RibBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
   0.477
XM1_3974
Putative disulfide bond formation protein DsbB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.476
hdl
Haloacid dehalogenase, type II; Function of strongly homologous gene; enzyme.
 
    0.431
livF-3
Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.418
livG
Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.418
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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