STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepAPenicillin-insensitive murein endopeptidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (280 aa)    
Predicted Functional Partners:
XM1_3237
HD-GYP domain-containing protein; Homologs of previously reported genes of unknown function.
       0.784
XM1_3026
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
   
 0.703
XM1_3238
Putative AMP-dependent synthetase/acyl-CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.499
XM1_3526
Ribonuclease T2; Function of strongly homologous gene; enzyme; Belongs to the RNase T2 family.
  
   
 0.481
rpsB
30S ribosomal subunit protein S2; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the universal ribosomal protein uS2 family.
       0.470
XM1_3239
Protein of unknown function; No homology to any previously reported sequences.
       0.458
XM1_3027
Putative peptidoglycan-binding domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
     0.447
XM1_0777
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; 8449900.
  
     0.412
XM1_3827
Protein of unknown function; No homology to any previously reported sequences.
   
    0.406
XM1_1160
Homologs of previously reported genes of unknown function.
  
     0.403
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.