STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3238Putative AMP-dependent synthetase/acyl-CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (544 aa)    
Predicted Functional Partners:
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.879
XM1_3239
Protein of unknown function; No homology to any previously reported sequences.
       0.697
XM1_3447
Putative Acyl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.655
XM1_1064
Formate dehydrogenase beta subunit; Function of strongly homologous gene; enzyme.
    
 
 0.634
hoxF
NAD-reducing hydrogenase HoxS subunit alpha (HoxF); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.634
rplF
50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
  
 
 0.628
mmgC
(2S)-methylsuccinyl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.577
mmgC-2
Short chain acyl-CoA dehydrogenase(Acyl-CoA dehydrogenase/oxidase,3-240); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.577
acdA
Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.577
XM1_2277
Medium-chain specific acyl-CoA dehydrogenase, mitochondrial; Function of strongly homologous gene; enzyme.
  
 
 0.577
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.