STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3255C4-dicarboxylate transport sensor protein dctB; Function of strongly homologous gene; cell process. (520 aa)    
Predicted Functional Partners:
dctB
Sensor histidine kinase, transcriptional regulator of C4-dicarboxylate transport; Function of strongly homologous gene; enzyme.
  
  
  0.944
glnG
Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD; Function of strongly homologous gene; regulator.
   
 0.912
XM1_3256
Protein of unknown function; No homology to any previously reported sequences.
 
 0.898
XM1_3258
Putative response regulator rpfG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
   0.848
XM1_3257
Putative chemotaxis protein CheY; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
   
   0.804
XM1_1478
Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.723
XM1_2061
Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.540
XM1_1187
Homologs of previously reported genes of unknown function.
  
     0.499
XM1_4009
Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
 
 0.492
XM1_1590
Homologs of previously reported genes of unknown function.
 
 
 0.484
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.