STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3258Putative response regulator rpfG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (383 aa)    
Predicted Functional Partners:
XM1_3256
Protein of unknown function; No homology to any previously reported sequences.
 
 0.961
XM1_1318
Putative Response regulator（GGDEF domain,147-323） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
    0.916
XM1_0696
Conserved protein of unknown function （containing a GGDEF domain） Homologs of previously reported genes of unknown function.
 
    0.901
XM1_2647
Putative Response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
    0.899
XM1_2449
Putative hybrid sensor and regulator (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 0.865
XM1_3255
C4-dicarboxylate transport sensor protein dctB; Function of strongly homologous gene; cell process.
 
 
   0.848
XM1_2132
Putative Diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.844
XM1_4485
Putative diguanylate cyclase (GGDEF) domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.838
XM1_2972
Putative two component diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
 0.794
XM1_3257
Putative chemotaxis protein CheY; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
   
   0.794
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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