STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3259Membrane-fusion protein; Function of strongly homologous gene; membrane component. (470 aa)    
Predicted Functional Partners:
XM1_3260
Putative ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.980
XM1_3261
Putative ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.977
XM1_0273
Putative ABC-type protease/lipase transport system, ATPase and permease component protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.903
XM1_1663
ABC-type protease/lipase transport system, ATPase and permease component protein; Function of strongly homologous gene; transporter.
 
 0.902
XM1_2520
Putative ATP-binding cassette subfamily C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.902
XM1_4165
Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.892
bepC
Outer membrane efflux protein; Function of strongly homologous gene; transporter.
 
 
 0.830
XM1_2170
Outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.803
XM1_3065
Putative outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.686
XM1_1772
Homologs of previously reported genes of unknown function.
 
     0.606
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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