STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3268Putative Phytoene/squalene synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (285 aa)    
Predicted Functional Partners:
ispA
Geranyltranstransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the FPP/GGPP synthase family.
  
 0.900
ispB
Octaprenyl diphosphate synthase ispB; Function of strongly homologous gene; enzyme; Belongs to the FPP/GGPP synthase family.
  
 0.900
ispU
Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.817
XM1_3270
Amino_oxidase domain-containing protein; Homologs of previously reported genes of unknown function.
 
   
 0.777
XM1_3269
Uncharacterized protein; Homologs of previously reported genes of unknown function.
 
     0.761
XM1_3273
Uncharacterized protein; Homologs of previously reported genes of unknown function.
 
     0.709
XM1_0226
Homologs of previously reported genes of unknown function.
  
  
 0.674
czcC-2
Cobalt-zinc-cadmium resistance protein CzcC; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.667
XM1_1424
Putative NADH-ubiquinone oxidoreductase 40 kDa subunit(NAD(P)-binding domain,4-255); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.645
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.625
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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