STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3304Soluble lytic murein transglycosylase and related regulatory protein; Function of strongly homologous gene; enzyme. (657 aa)    
Predicted Functional Partners:
hdl
Haloacid dehalogenase, type II; Function of strongly homologous gene; enzyme.
  
    0.825
XM1_3302
Protein of unknown function; No homology to any previously reported sequences.
       0.784
XM1_3300
Hemerythrin; Function of strongly homologous gene; cell process.
  
   0.689
lolD
Outer membrane-specific lipoprotein transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
   
 
 0.670
ilvD
Dihydroxy-acid dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the IlvD/Edd family.
       0.657
XM1_3307
Membrane-fusion protein; Function of strongly homologous gene; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.625
XM1_3306
Peptide ABC transporter permease; Function of strongly homologous gene; transporter.
       0.622
XM1_3712
Flagellar capping protein; Function of strongly homologous gene; structure.
  
  
 0.570
czcA-2
Putative Flagellar hook protein FlgE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.568
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.554
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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