STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3307Membrane-fusion protein; Function of strongly homologous gene; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (387 aa)    
Predicted Functional Partners:
XM1_3306
Peptide ABC transporter permease; Function of strongly homologous gene; transporter.
 
  
 0.974
lolD
Outer membrane-specific lipoprotein transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.912
XM1_3338
Outer membrane protein; Function of strongly homologous gene; structure.
 
 
 0.673
XM1_4313
Putative multidrug efflux outer membrane protein, RND family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.657
XM1_2170
Outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.644
XM1_2516
Putative Efflux transporter, RND family, MFP subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.636
XM1_3065
Putative outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.633
XM1_3304
Soluble lytic murein transglycosylase and related regulatory protein; Function of strongly homologous gene; enzyme.
     
 0.625
hdl
Haloacid dehalogenase, type II; Function of strongly homologous gene; enzyme.
       0.622
XM1_3302
Protein of unknown function; No homology to any previously reported sequences.
       0.621
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.