STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3317CRP/FNR family transcriptional regulator, cyclic AMP receptor protein; Function of strongly homologous gene; enzyme. (219 aa)    
Predicted Functional Partners:
XM1_3055
Putative Adenylate cyclase 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.735
XM1_2691
Putative Adenylate cyclase 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.712
XM1_1846
Putative Adenylate cyclase 1(Adenylyl cyclase class-3/4/guanylyl cyclase,482-667); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.711
XM1_2198
Putative Ferredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.654
XM1_3316
Aldehyde dehydrogenase family 7 member A1; Function of strongly homologous gene; enzyme; Belongs to the aldehyde dehydrogenase family.
   
   0.612
XM1_3315
Thiamine pyrophosphate-requiring enzyme; Function of strongly homologous gene; enzyme; Belongs to the TPP enzyme family.
     
 0.585
XM1_2199
Homologs of previously reported genes of unknown function.
 
 
 0.571
XM1_1355
CRP/FNR family transcriptional regulator, cyclic AMP receptor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
     0.547
XM1_3314
Protein of unknown function; No homology to any previously reported sequences.
       0.417
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.404
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.