STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3373Conserved protein of unknown function(containing Pentapeptide repeat-like domain,50-157); Homologs of previously reported genes of unknown function. (170 aa)    
Predicted Functional Partners:
XM1_3374
FGE-sulfatase domain-containing protein; Homologs of previously reported genes of unknown function.
 
     0.758
XM1_2559
Putative Wd40 repeat, subgroup; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.487
hemB
Delta-aminolevulinic acid dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ALAD family.
  
    0.464
gyrB
Protein of unknown function; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.426
XM1_0015
Putative site-specific recombinase, resolvase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.426
parE
DNA topoisomerase 4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
   
 
 0.426
XM1_1893
Protein of unknown function(Domain of unknown function DUF59,4-78); No homology to any previously reported sequences.
     
 0.416
XM1_1699
Homologs of previously reported genes of unknown function.
      
 0.402
XM1_1892
Homologs of previously reported genes of unknown function.
      
 0.402
XM1_3992
ABC-type transport system, involved in lipoprotein release, permease component; Function of strongly homologous gene; transporter.
      
 0.402
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.