STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3376Conserved protein of unknown function (containing Glycoside hydrolase, superfamily 16-304); Homologs of previously reported genes of unknown function. (561 aa)    
Predicted Functional Partners:
XM1_3375
SAM-dependent methyltransferase; Function of strongly homologous gene; enzyme.
       0.780
XM1_3377
Secreted protein; Function of strongly homologous gene; cell process.
       0.614
dnaE
DNA polymerase III subunit alpha; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.614
XM1_3379
HD-GYP domain-containing protein; Function of strongly homologous gene; transporter.
       0.530
XM1_3052
Putative ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.502
XM1_1868
Homologs of previously reported genes of unknown function.
  
     0.457
XM1_2237
Putative hydrogenase maturation protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
     0.420
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.