STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3379HD-GYP domain-containing protein; Function of strongly homologous gene; transporter. (403 aa)    
Predicted Functional Partners:
XM1_2447
Putative response regulator rpfG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
    0.690
XM1_3377
Secreted protein; Function of strongly homologous gene; cell process.
       0.671
dnaE
DNA polymerase III subunit alpha; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.671
XM1_3375
SAM-dependent methyltransferase; Function of strongly homologous gene; enzyme.
       0.530
XM1_3376
Conserved protein of unknown function (containing Glycoside hydrolase, superfamily 16-304); Homologs of previously reported genes of unknown function.
       0.530
XM1_1309
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.489
lolD-2
Outer membrane-specific lipoprotein transporter subunit; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
       0.488
LolC
ABC-type transport system, permease component,Lipoprotein ABC transporter; Function of strongly homologous gene; transporter.
       0.488
XM1_4334
Putative response regulator containing a CheY-like receiver domain and a GGDEF domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 
 0.460
XM1_1708
Putative diguanylate cyclase (GGDEF) domain(Adenylyl cyclase class-3/4/guanylyl cyclase, 154-322); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 
 0.454
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.