STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3387Putative hydroxyphenylacetate 3-monooxygenase reductase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (167 aa)    
Predicted Functional Partners:
bluB
5,6-dimethylbenzimidazole synthase(5,6-dimethylbenzimidazole synthase BluB,15-215); Function of strongly homologous gene; enzyme.
  
 
 0.638
motA
Proton conductor component of flagella motor; Function of homologous gene experimentally demonstrated in an other organism; cell process.
       0.581
motB
Flagellar motor protein; Function of strongly homologous gene; cell process.
  
    0.556
ribF
Bifunctional riboflavin kinase and FAD synthetase ribF; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ribF family.
    
 0.540
ribB
Riboflavin biosynthesis protein RibBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.496
XM1_3390
Conserved membrane protein of unknown function(containing RDD domain;36-164); Homologs of previously reported genes of unknown function.
       0.481
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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