STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctQTRAP-type mannitol/chloroaromatic compound transport system, small permease component; Function of strongly homologous gene; transporter. (187 aa)    
Predicted Functional Partners:
dctM
TRAP-type mannitol/chloroaromatic compound transport system, large permease component; Function of strongly homologous gene; transporter.
 
  
 0.968
XM1_3394
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.817
ate
arginyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
       0.559
dctM-2
TRAP-type C4-dicarboxylate transport system, large permease component DctM; Function of strongly homologous gene; transporter.
 
     0.458
motB
Flagellar motor protein; Function of strongly homologous gene; cell process.
       0.409
XM1_1908
Putative Truncated possibly inactive lysyl-tRNA synthetase (Lysyl-tRNA synthetase-related 20-343); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.401
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.