STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3397Dehydrogenase; Function of strongly homologous gene; enzyme. (257 aa)    
Predicted Functional Partners:
XM1_2284
Putative MaoC-like dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.917
XM1_3398
Acyl-CoA dehydrogenase; Function of strongly homologous gene; enzyme.
 
 0.897
XM1_3399
Enoyl-CoA hydratase/carnithine racemase; Function of strongly homologous gene; enzyme.
 
 0.894
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.768
yqjM
NADPH-dependent flavin oxidoreductase; Function of strongly homologous gene; enzyme.
 
 
 0.686
XM1_3865
Uncharacterized protein; Homologs of previously reported genes of unknown function.
 
     0.656
fabD
malonyl-CoA-[acyl-carrier-protein] transacylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.643
badH
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; Function of strongly homologous gene; enzyme.
 
    
0.621
XM1_2495
Putative Beta-ketoacyl synthase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.609
XM1_3396
Transcriptional regulator; Function of strongly homologous gene; regulator.
     
 0.595
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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