STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3404Universal stress protein UspA and related nucleotide-binding protein; Function of strongly homologous gene; factor. (227 aa)    
Predicted Functional Partners:
dcaF-2
Beta-ketoadipyl CoA thiolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.787
XM1_3406
3-hydroxyacyl-CoA dehydrogenase; Function of strongly homologous gene; enzyme.
     
 0.783
paaF-2
enoyl-CoA hydratase-isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.781
betB
NAD+-dependent betaine aldehyde dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the aldehyde dehydrogenase family.
     
 0.591
XM1_3408
Transcriptional regulator, IclR family; Function of strongly homologous gene; regulator.
     
 0.552
XM1_3411
ABC-type branched-chain amino acid transport systems, periplasmic component; Function of strongly homologous gene; transporter.
 
     0.514
acads
Acyl-CoA dehydrogenase, short-chain specific; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.465
XM1_3410
Putative AMP-dependent synthetase and ligase; Function of strongly homologous gene; enzyme.
       0.465
XM1_0571
Putative ribosome-associated, sigma 54 modulation protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
  
 0.440
ogt
Methylated-DNA--protein-cysteine methyltransferase, constitutive; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
  
    0.430
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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