STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3408Transcriptional regulator, IclR family; Function of strongly homologous gene; regulator. (265 aa)    
Predicted Functional Partners:
XM1_0109
Putative Allophanate hydrolase, subunit 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.870
XM1_0110
Putative Allophanate hydrolase subunit 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.815
XM1_3410
Putative AMP-dependent synthetase and ligase; Function of strongly homologous gene; enzyme.
 
 
 
 0.753
acads
Acyl-CoA dehydrogenase, short-chain specific; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.715
XM1_3406
3-hydroxyacyl-CoA dehydrogenase; Function of strongly homologous gene; enzyme.
 
  
 0.697
dcaF-2
Beta-ketoadipyl CoA thiolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.651
XM1_3411
ABC-type branched-chain amino acid transport systems, periplasmic component; Function of strongly homologous gene; transporter.
       0.623
XM1_3901
Permease of the major facilitator superfamily; Function of strongly homologous gene; transporter.
 
  
 0.588
paaF-2
enoyl-CoA hydratase-isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.559
XM1_3417
Putative esterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.554
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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