STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3411ABC-type branched-chain amino acid transport systems, periplasmic component; Function of strongly homologous gene; transporter. (388 aa)    
Predicted Functional Partners:
XM1_3414
Putative branched-chain amino acid ABC transporter, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.985
XM1_3413
Bbranched-chain amino acid ABC transporter permease; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.982
XM1_3415
Putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.792
XM1_3328
Putative High-affinity branched-chain amino acid transport system permease protein livM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.724
acads
Acyl-CoA dehydrogenase, short-chain specific; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.719
XM1_3410
Putative AMP-dependent synthetase and ligase; Function of strongly homologous gene; enzyme.
       0.719
livM
Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.708
livF-5
Branched-chain amino acid transport system ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.707
livH
Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.707
XM1_3327
Branched-chain amino acid ABC-type transport system, permease components; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.703
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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