STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livF-5Branched-chain amino acid transport system ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter. (242 aa)    
Predicted Functional Partners:
XM1_3414
Putative branched-chain amino acid ABC transporter, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.973
XM1_3413
Bbranched-chain amino acid ABC transporter permease; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.969
XM1_3415
Putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
0.923
XM1_3894
ABC-type branched-chain amino acid transport system; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.887
XM1_2748
Putative ABC-type branched-chain amino acid transport system protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.866
XM1_2789
Putative ABC-type branched-chain amino acid transport system protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.866
XM1_3215
Branched-chain amino acid transport system permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.866
livM
Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.852
XM1_2749
Putative Branched chain amino acid ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.839
XM1_3216
Putative branched-chain amino acid ABC transporter, permease component (livH-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.839
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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