STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3421Predicted O-linked N-acetylglucosamine transferase; Function of strongly homologous gene; enzyme. (656 aa)    
Predicted Functional Partners:
XM1_3140
Conserved protein of unknown function(containing Tetratricopeptide repeat domain,274-307;); Homologs of previously reported genes of unknown function.
 
  
0.931
XM1_4715
Putative tetratricopeptide repeat-containing domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
  
 
0.931
Sugct
L-carnitine dehydratase/bile acid-inducible protein F (CoA-transferase family); Function of strongly homologous gene; enzyme; Belongs to the CoA-transferase III family.
       0.657
XM1_3418
Dioxygenase related to 2-nitropropane dioxygenase; Function of strongly homologous gene; enzyme.
       0.640
XM1_3419
Protein of unknown function; No homology to any previously reported sequences.
       0.640
XM1_1576
Conserved protein of unknown function (Tetratricopeptide-like helical,7-163); Homologs of previously reported genes of unknown function.
 
 0.631
XM1_3413
Bbranched-chain amino acid ABC transporter permease; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.631
XM1_3414
Putative branched-chain amino acid ABC transporter, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.631
XM1_3415
Putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.631
livF-5
Branched-chain amino acid transport system ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.631
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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