STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3460Predicted transmembrane transcriptional regulator; Function of strongly homologous gene; putative regulator. (256 aa)    
Predicted Functional Partners:
rpoE
ECF subfamily RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.969
XM1_3462
Conserved exported protein of unknown function(containing Lipoprotein repeat domain,32-68;79-123); Homologs of previously reported genes of unknown function.
 
     0.928
XM1_3049
Putative RNA polymerase sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.754
rpoE-2
RNA polymerase sigma-70 factor, ECF family protein; Function of strongly homologous gene; regulator; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.754
XM1_0041
Homologs of previously reported genes of unknown function.
  
 
 0.728
XM1_2300
Protein of unknown function; No homology to any previously reported sequences.
  
 
 0.728
cheY-7
Chemotaxis protein CheY; Function of strongly homologous gene; regulator.
     
 0.438
tatB
Sec-independent protein translocase protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
  
    0.413
tatA
Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
    0.413
XM1_4783
Putative serine/threonine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.402
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.