STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3485Putative chaperone, TorD family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (201 aa)    
Predicted Functional Partners:
fdnI1
Formate dehydrogenase, gamma subunit; Function of strongly homologous gene; enzyme.
 
  
 0.950
fdh3A
Formate dehydrogenase alpha subunit precursor (tat pathway signal); Function of strongly homologous gene; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.946
fdhB
Formate dehydrogenase iron-sulfur subunit; Function of strongly homologous gene; enzyme.
 
  
 0.944
XM1_3481
4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; carrier.
 
  
 0.913
XM1_3484
Protein of unknown function; No homology to any previously reported sequences.
 
     0.886
fdhD-2
Putative formate dehydrogenase accessory protein FdhD-like; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
   
 0.849
XM1_3486
Protein of unknown function; No homology to any previously reported sequences.
     
 0.806
XM1_2191
Putative ABC-type tungstate transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.738
XM1_2193
Putative ABC-type tungstate transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.705
XM1_3489
Protein of unknown function; No homology to any previously reported sequences.
       0.691
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.