STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3486Protein of unknown function; No homology to any previously reported sequences. (79 aa)    
Predicted Functional Partners:
XM1_3485
Putative chaperone, TorD family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
     
 0.806
fdh3A
Formate dehydrogenase alpha subunit precursor (tat pathway signal); Function of strongly homologous gene; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.785
fdnI1
Formate dehydrogenase, gamma subunit; Function of strongly homologous gene; enzyme.
  
    0.768
fdhB
Formate dehydrogenase iron-sulfur subunit; Function of strongly homologous gene; enzyme.
  
    0.723
XM1_3489
Protein of unknown function; No homology to any previously reported sequences.
       0.689
XM1_3484
Protein of unknown function; No homology to any previously reported sequences.
       0.483
ctaE
Cytochrome c oxidase subunit III; Function of strongly homologous gene; enzyme.
   
    0.408
norE
Cytochrome c oxidase, subunit III (NorE protein involved in nitric oxide reduction); Function of strongly homologous gene; enzyme.
   
    0.408
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.