STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdnI1Formate dehydrogenase, gamma subunit; Function of strongly homologous gene; enzyme. (326 aa)    
Predicted Functional Partners:
fdhB
Formate dehydrogenase iron-sulfur subunit; Function of strongly homologous gene; enzyme.
 
 0.998
fdh3A
Formate dehydrogenase alpha subunit precursor (tat pathway signal); Function of strongly homologous gene; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.997
XM1_2181
Putative Fe-S-cluster-containing hydrogenase components 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
 0.980
XM1_1065
Formate dehydrogenase major subunit; Function of strongly homologous gene; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.978
XM1_3485
Putative chaperone, TorD family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.950
XM1_1064
Formate dehydrogenase beta subunit; Function of strongly homologous gene; enzyme.
 
 
 0.927
purU
Formyltetrahydrofolate hydrolase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
  0.900
XM1_3484
Protein of unknown function; No homology to any previously reported sequences.
 
     0.865
XM1_3481
4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; carrier.
 
   
 0.843
fdhD-2
Putative formate dehydrogenase accessory protein FdhD-like; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
  
 0.837
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.