STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3496Conserved protein of unknown function(containing DUF1013 domian,34-169); Homologs of previously reported genes of unknown function. (192 aa)    
Predicted Functional Partners:
lysS
Lysine--tRNA ligase; Function of strongly homologous gene; enzyme; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.794
XM1_1954
Conserved protein of unknown function（Stringent starvation protein B,13-127） Homologs of previously reported genes of unknown function.
  
   
 0.766
XM1_3118
Conserved protein of unknown function(containing Azospirillum phage Cd, Gp10 domain,13-85); Homologs of previously reported genes of unknown function.
  
   
 0.755
XM1_0826
Homologs of previously reported genes of unknown function.
  
     0.722
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.714
XM1_0727
Putative electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
   
    0.644
XM1_1423
Putative Ribonuclease D(Ribonuclease H-like domain,8-191); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.628
XM1_4463
Conserved protein of unknown function (Lambda repressor-like, DNA-binding domain 6-91); Homologs of previously reported genes of unknown function.
  
     0.606
XM1_1173
Homologs of previously reported genes of unknown function.
  
     0.604
XM1_0679
Putative transcriptional regulator, HTH-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.596
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.