STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3515Protein of unknown function; No homology to any previously reported sequences. (591 aa)    
Predicted Functional Partners:
ftsK
DNA translocase FtsK; Function of homologous gene experimentally demonstrated in an other organism; cell process.
    
 
 0.532
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.523
XM1_4542
TonB-dependent receptor; Function of strongly homologous gene; transporter.
    
 
 0.512
XM1_0841
Homologs of previously reported genes of unknown function.
    
 
 0.503
XM1_2526
Homologs of previously reported genes of unknown function.
  
 
 0.473
cbbM
Ribulose bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily.
       0.442
prkB
Phosphoribulokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.434
ctpA
Carboxy-terminal-processing protease（C-terminal-processing peptidase S41A,46-363） Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the peptidase S41A family.
  
   0.425
XM1_1788
Putative C-terminal processing peptidase（C-terminal-processing peptidase S41A,127-428） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the peptidase S41A family.
  
   0.425
XM1_4009
Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
 
 0.408
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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