STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3522Conserved protein of unknown function(containing ATPase-like, ATP-binding domain,323-432); Homologs of previously reported genes of unknown function. (449 aa)    
Predicted Functional Partners:
XM1_3873
Signal transduction response regulator, CheY-like response regulator; Function of strongly homologous gene; regulator.
 
 
 
 0.806
rcp-3
Two-component response regulator (CheY-like); Function of strongly homologous gene; regulator.
 
   
 0.784
XM1_3521
Putative extracellular solute-binding protein, family 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.784
rcp
Response regulator rcp1; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
   
 0.783
rcp-2
Response regulator rcp1; Function of strongly homologous gene; regulator.
 
   
 0.783
rcp-4
Two-component response regulator (CheY-like); Function of strongly homologous gene; regulator.
 
   
 0.782
XM1_2722
Conserved protein of unknown function (CheY-like superfamily, 2-154; Homologs of previously reported genes of unknown function.
 
 
 
 0.553
accC
acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.536
XM1_3519
acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.536
aroQ
3-dehydroquinate dehydratase 2; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.536
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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