STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3524Putative Carboxylesterase BioH; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (231 aa)    
Predicted Functional Partners:
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.734
acpP
Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.654
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
     
 0.550
XM1_0611
Homologs of previously reported genes of unknown function.
    
 0.522
XM1_2325
Homologs of previously reported genes of unknown function.
    
 0.522
XM1_1030
Acyl carrier protein; Function of strongly homologous gene; carrier.
   
 
 0.430
gcdH
glutaryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.425
mmgC
(2S)-methylsuccinyl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.421
mmgC-2
Short chain acyl-CoA dehydrogenase(Acyl-CoA dehydrogenase/oxidase,3-240); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.421
acdA
Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.421
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.