STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
actP-3Acetate transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (561 aa)    
Predicted Functional Partners:
XM1_3532
Putative inner membrane protein involved in acetate transport; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
  
 0.976
XM1_3440
Hypothetical protein; No homology to any previously reported sequences.
 
  
 0.901
yjcH
Conserved hypothetical protein; Function of strongly homologous gene; putative membrane component.
 
  
 0.901
XM1_3963
Predicted signal-transduction protein containing cAMP-binding and CBS domains; Function of strongly homologous gene; putative receptor.
 
  
 0.703
acs
acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.658
acsA-2
Acetyl-coenzyme A synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.658
XM1_3353
Putative propionyl-CoA synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.502
XM1_3533
FeoC domain-containing protein; Homologs of previously reported genes of unknown function.
       0.461
feoB-2
Fused ferrous iron transporter, protein B: GTP-binding protein; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
       0.461
feoA-2
Ferrous iron transporter, protein A; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.461
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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