STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3558PBPb domain-containing protein; Homologs of previously reported genes of unknown function. (252 aa)    
Predicted Functional Partners:
XM1_1180
Polar amino acid transport system substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.641
XM1_1934
Homologs of previously reported genes of unknown function.
  
     0.625
XM1_3559
Putative thiol-disulfide isomerase/thioredoxins-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
   0.578
XM1_0569
Homologs of previously reported genes of unknown function.
  
     0.550
XM1_3710
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.542
XM1_1179
Serine phosphatase RsbU（Protein phosphatase 2C-like,348-546） Function of strongly homologous gene; enzyme.
 
     0.539
XM1_1275
Conserved protein of unknown function（NERD,16-109） Homologs of previously reported genes of unknown function.
  
     0.486
gltK
Glutamate and aspartate transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.486
XM1_4331
Homologs of previously reported genes of unknown function.
 
     0.447
gltL
Glutamate/aspartate transport protein (ABC superfamily, atp_bind) (ABC transporter-like,41-165); Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.442
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.