STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaEBeta-ketoadipyl CoA thiolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)    
Predicted Functional Partners:
fadB
3-hydroxyacyl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.995
mmgC-2
Short chain acyl-CoA dehydrogenase(Acyl-CoA dehydrogenase/oxidase,3-240); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.946
XM1_2277
Medium-chain specific acyl-CoA dehydrogenase, mitochondrial; Function of strongly homologous gene; enzyme.
 
 0.946
XM1_2283
Acyl-CoA dehydrogenase domain protein; Function of strongly homologous gene; enzyme.
  
 0.946
XM1_3398
Acyl-CoA dehydrogenase; Function of strongly homologous gene; enzyme.
  
 0.946
gcdH
glutaryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.945
XM1_0378
Putative propionyl-CoA carboxylase beta chain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.937
Pcca
propionyl-CoA carboxylase alpha chain, biotin-carrying subunit; Function of strongly homologous gene; enzyme.
  
 0.929
ygfG
methylmalonyl-CoA decarboxylase, biotin-independent; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.929
XM1_2487
Putative Beta-oxoacyl-CoA thiolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.928
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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