STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3613Uncharacterized protein; Homologs of previously reported genes of unknown function. (363 aa)    
Predicted Functional Partners:
cueR
DNA-binding transcriptional activator of copper-responsive regulon genes; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.634
copA
Copper transporter ATPase; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.608
XM1_1232
Putative Membrane-bound metallopeptidase（Duplicated hybrid motif,292-496） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.563
XM1_3612
Protein of unknown function; No homology to any previously reported sequences.
       0.551
XM1_3611
Copper chaperone; Function of strongly homologous gene; factor.
       0.539
XM1_1536
Putative Flagellar assembly regulator FliX(Flagellar assembly regulator FliX, class II,1-141); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.531
XM1_4378
Homologs of previously reported genes of unknown function.
  
     0.495
XM1_4375
Homologs of previously reported genes of unknown function.
  
     0.463
cpoB
Conserved protein of unknown function （Tetratricopeptide-like helical 198-314） Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
    0.453
fliL
Flagellar basal body-associated protein fliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
    0.433
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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