STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3657Transcriptional regulator; Function of strongly homologous gene; regulator. (237 aa)    
Predicted Functional Partners:
XM1_3656
Putative carbon monoxide dehydrogenase accessory protein CoxG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
       0.605
XM1_3658
Protein of unknown function; No homology to any previously reported sequences.
       0.598
XM1_3092
Protein of unknown function; No homology to any previously reported sequences.
  
    0.528
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.520
XM1_1868
Homologs of previously reported genes of unknown function.
  
     0.456
XM1_2915
Homologs of previously reported genes of unknown function.
  
 
   0.452
XM1_3633
Protein of unknown function; No homology to any previously reported sequences.
  
 
   0.447
XM1_3655
Permease of the drug/metabolite transporter superfamily; Function of strongly homologous gene; transporter.
     
 0.446
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.428
XM1_3060
Putative sel1-like repeat protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; phenotype.
  
 
 
 0.411
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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