STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3680Response regulatory domain-containing protein; Homologs of previously reported genes of unknown function. (296 aa)    
Predicted Functional Partners:
XM1_0113
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
  0.946
XM1_1218
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
  0.912
phoB
Two-component system, OmpR family, phosphate regulon response regulator PhoB; Function of homologous gene experimentally demonstrated in an other organism; regulator.
   
  0.907
bceB
ABC transporter (permease); Function of strongly homologous gene; transporter.
 
   0.791
XM1_2360
Putative CheY-like receiver; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
     0.763
XM1_2364
Homologs of previously reported genes of unknown function.
 
   0.746
repA
Plasmid replication protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   0.712
XM1_4378
Homologs of previously reported genes of unknown function.
  
    0.703
XM1_1534
Putative flagellar protein FlgJ, N-terminal(Flagellar protein FlgJ, N-terminal,51-98); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
    0.694
XM1_2784
Homologs of previously reported genes of unknown function.
  
     0.691
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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