STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3698O-linked N-acetylglucosamine transferase; Function of strongly homologous gene; enzyme. (728 aa)    
Predicted Functional Partners:
XM1_2171
TPR repeat-containing protein; Homologs of previously reported genes of unknown function.
 
 
 0.794
XM1_2912
Conserved protein of unknown function (UDP-Glycosyltransferase/glycogen phosphorylase 275-509; Homologs of previously reported genes of unknown function.
 
 
 0.790
XM1_3212
Protein of unknown function; No homology to any previously reported sequences.
 
 
 0.739
tolB
Protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
  
 0.703
mamA
Magnetosome protein MamA; Function of strongly homologous gene; membrane component.
 
 
 0.653
XM1_3697
Phosphohistidine phosphatase, SixA; Function of strongly homologous gene; enzyme.
       0.649
XM1_1576
Conserved protein of unknown function (Tetratricopeptide-like helical,7-163); Homologs of previously reported genes of unknown function.
 
 
 0.625
XM1_2759
Homologs of previously reported genes of unknown function.
 
     0.625
XM1_4687
Putative O-linked N-acetylglucosamine transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
0.588
XM1_4709
Putative methyltransferase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
0.563
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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