STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gadX-2DNA-binding transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator. (240 aa)    
Predicted Functional Partners:
XM1_3769
Putative Cadherin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
   
 0.820
XM1_3770
Outer membrane efflux protein; Function of strongly homologous gene; structure.
     
 0.719
XM1_3771
RTX toxins and related Ca2+-binding protein; Function of strongly homologous gene; receptor.
 
   
 0.688
XM1_3773
HlyD family secretion protein; Function of strongly homologous gene; regulator; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.634
XM1_3774
Membrane-fusion protein; Function of strongly homologous gene; transporter.
     
 0.633
XM1_3775
Peptidase, M50 family protein; Function of strongly homologous gene; enzyme.
     
 0.633
XM1_3772
Protein of unknown function; No homology to any previously reported sequences.
       0.624
gadX
DNA-binding transcriptional dual regulator; Function of strongly homologous gene; regulator.
 
    
0.610
XM1_3776
Protein of unknown function; No homology to any previously reported sequences.
       0.526
rpoA
RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.516
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.