STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3769Putative Cadherin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (1381 aa)    
Predicted Functional Partners:
XM1_3770
Outer membrane efflux protein; Function of strongly homologous gene; structure.
 
  
 0.931
XM1_3774
Membrane-fusion protein; Function of strongly homologous gene; transporter.
 
    0.908
XM1_3775
Peptidase, M50 family protein; Function of strongly homologous gene; enzyme.
 
    0.908
XM1_3773
HlyD family secretion protein; Function of strongly homologous gene; regulator; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.898
gadX-2
DNA-binding transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
   
 0.820
XM1_3791
Outer membrane protein (fragment); Function of strongly homologous gene; membrane component.
 
  
 0.774
XM1_4579
Outer membrane efflux protein; Function of strongly homologous gene; transporter.
 
  
 0.769
XM1_4575
Peptidase, M50 family protein; Function of strongly homologous gene; enzyme.
 
    0.764
XM1_4576
Membrane-fusion protein; Function of strongly homologous gene; transporter.
 
    0.764
XM1_3763
Outer membrane efflux protein; Function of strongly homologous gene; transporter.
 
  
 0.760
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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