STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcBMalate synthase G (fragment); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (454 aa)    
Predicted Functional Partners:
XM1_3364
Phosphotransacetylase; Function of strongly homologous gene; enzyme.
  
 
 0.990
ytsJ
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.976
dme
NAD-dependent malic enzyme; Function of strongly homologous gene; putative enzyme.
  
 
 0.976
gltA
Citrate synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the citrate synthase family.
  
 0.973
mdh
Malate dehydrogenase(Malate dehydrogenase, type 3,3-313); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
   
 0.949
acs
acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.947
XM1_1543
Putative Acyl-coenzyme A synthetase/AMP-(Fatty) acid ligase(AMP-dependent synthetase/ligase,58-466); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.947
acsA-2
Acetyl-coenzyme A synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.947
fumA
Fumarate hydratase (fumarase A), aerobic Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.942
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.942
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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