STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3802Conserved protein of unknown function(containing MCP-signal associated domain,13-79;170-234); Homologs of previously reported genes of unknown function. (283 aa)    
Predicted Functional Partners:
mamF-2
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
  
     0.681
mamF
Magnetosome protein MamF; Function of strongly homologous gene; enzyme.
  
     0.646
XM1_1787
Homologs of previously reported genes of unknown function.
  
     0.633
XM1_1927
Conserved protein of unknown function, containing methyltransferase type 11; No homology to any previously reported sequences.
  
     0.611
mamH
Magnetosome protein MamH; Function of strongly homologous gene; putative membrane component.
  
     0.606
mamF-3
Magnetosome protein MamF; Function of strongly homologous gene; membrane component.
  
     0.596
mamZ
Magnetosome protein MamZ; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using [...]
  
     0.558
XM1_3803
CRP/FNR family transcriptional regulator, anaerobic regulatory protein; Function of strongly homologous gene; regulator.
       0.528
mamO
Magnetosome protein MamO; Function of strongly homologous gene; putative enzyme.
  
     0.501
bepC
Outer membrane efflux protein; Function of strongly homologous gene; transporter.
  
     0.476
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.