STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3863Putative AMP-dependent synthetase and ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (546 aa)    
Predicted Functional Partners:
yqjM
NADPH-dependent flavin oxidoreductase; Function of strongly homologous gene; enzyme.
 
 0.988
XM1_3084
Putative AMP-dependent synthetase and ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
0.942
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.881
XM1_3865
Uncharacterized protein; Homologs of previously reported genes of unknown function.
 
     0.846
XM1_3399
Enoyl-CoA hydratase/carnithine racemase; Function of strongly homologous gene; enzyme.
 
 
 0.831
XM1_3814
Uncharacterized protein; Homologs of previously reported genes of unknown function.
 
     0.756
XM1_3817
MarR family transcriptional regulator; Function of strongly homologous gene; regulator.
 
   
 0.715
XM1_2264
Putative Thioesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.713
XM1_3862
MarR family transcriptional regulator; Function of strongly homologous gene; regulator.
 
   
 0.713
XM1_0600
Putative 4-hydroxybenzoyl CoA thioesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.694
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.