STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3889Pyruvate with ferredoxin oxidoreductase and related 2-oxoacid with ferredoxin oxidoreductase; Function of strongly homologous gene; enzyme. (89 aa)    
Predicted Functional Partners:
padI
NADH-dependent phenylglyoxylate dehydrogenase subunit beta; Function of strongly homologous gene; enzyme.
 
 0.998
padG
NADH-dependent phenylglyoxylate dehydrogenase subunit alpha; Function of strongly homologous gene; enzyme.
 
 0.998
padE
NADH-dependent phenylglyoxylate dehydrogenase subunit gamma; Function of strongly homologous gene; enzyme.
 
 
 0.996
padH
NADH-dependent phenylglyoxylate dehydrogenase subunit epsilon; Function of strongly homologous gene; enzyme.
 
  
 0.982
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.971
XM1_2900
Putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.847
XM1_2734
Putative Phenylacetyl CoA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.802
XM1_1873
Phenylacetyl-CoA:acceptor oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.798
XM1_1874
Putative Fe-S-cluster-containing hydrogenase components 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.667
XM1_2735
Putative formate-dependent nitrite reductase, 4Fe4S subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
    
 0.667
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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