STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3901Permease of the major facilitator superfamily; Function of strongly homologous gene; transporter. (419 aa)    
Predicted Functional Partners:
XM1_3993
Protein of unknown function; No homology to any previously reported sequences.
  
     0.641
XM1_3408
Transcriptional regulator, IclR family; Function of strongly homologous gene; regulator.
 
  
 0.588
GOR
Glutathione reductase, chloroplastic; Maintains high levels of reduced glutathione.
       0.557
XM1_3990
Protein of unknown function; No homology to any previously reported sequences.
  
     0.530
XM1_3992
ABC-type transport system, involved in lipoprotein release, permease component; Function of strongly homologous gene; transporter.
  
     0.530
XM1_3899
Putative radical SAM domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.517
XM1_2770
Putative transporter, Major facilitator superfamily MFS_1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.454
fbpA
Iron(III) ABC transporter, periplasmic iron(III)-binding protein; Function of strongly homologous gene; transporter.
  
  
 0.453
XM1_4544
Putative ABC transporter, periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.453
XM1_4494
Putative permease of the major facilitator superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.433
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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