STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glnGTwo-component system, NtrC family, C4-dicarboxylate transport response regulator DctD; Function of strongly homologous gene; regulator. (446 aa)    
Predicted Functional Partners:
dctB
Sensor histidine kinase, transcriptional regulator of C4-dicarboxylate transport; Function of strongly homologous gene; enzyme.
 0.991
XM1_3255
C4-dicarboxylate transport sensor protein dctB; Function of strongly homologous gene; cell process.
   
 0.912
XM1_4672
Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.802
rpoN
RNA polymerase sigma-54 factor(RNA polymerase sigma factor 54,11-496); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.760
XM1_2568
Putative MCP methyltransferase/methylesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.612
ntrB
Nitrogen regulation protein NtrB; Function of strongly homologous gene; enzyme.
 
 0.610
XM1_2649
Putative ATPase (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.609
XM1_3997
Putative serine/threonine kinase with signal transduction histidinekinase and gaf sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.609
XM1_4558
Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.609
fleN
Flagellar number regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
 
 0.583
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.