STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hybAHydrogenase 2 4Fe-4S ferredoxin-type component; Function of homologous gene experimentally demonstrated in an other organism; putative carrier. (339 aa)    
Predicted Functional Partners:
hybB
Function of strongly homologous gene; carrier.
 
 0.982
hybO
Hydrogenase 2, small subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.858
dmsA
Anaerobic dimethyl sulfoxide reductase chain A; Function of strongly homologous gene; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.838
hybC
Hydrogenase 2, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.833
napA
Nitrate reductase, periplasmic, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
 
 0.815
XM1_2734
Putative Phenylacetyl CoA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.804
XM1_1873
Phenylacetyl-CoA:acceptor oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.801
fdnI1
Formate dehydrogenase, gamma subunit; Function of strongly homologous gene; enzyme.
 
 
 0.798
XM1_3918
Maturation element for hydrogenase 2 (modular protein); Function of strongly homologous gene; factor.
 
  
 0.769
XM1_4255
Putative Hdr-like menaquinol oxidoreductase integral membrane subunit (HmeB/DsrP); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
 
 
 0.733
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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