STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hybFProtein involved with the maturation of hydrogenases 1 and 2; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (114 aa)    
Predicted Functional Partners:
hypB
GTP hydrolase involved in nickel liganding into hydrogenases; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.992
hypD
Protein required for maturation of hydrogenases; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the HypD family.
 
  
 0.973
hypF
Hydrogenase maturation factor; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.971
hypE
Carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.968
hypC-2
Hydrogenase expression/formation protein HypC; Function of homologous gene experimentally demonstrated in an other organism; phenotype.
 
  
 0.963
hybC
Hydrogenase 2, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.945
XM1_3918
Maturation element for hydrogenase 2 (modular protein); Function of strongly homologous gene; factor.
 
  
 0.913
hupK
Hydrogenase expression/formation protein HupK; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.897
hupL
Uptake hydrogenase large subunit; Function of strongly homologous gene; putative enzyme.
 
 
 0.875
XM1_2644
Putative Uptake hydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.871
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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