STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3932Protein of unknown function; No homology to any previously reported sequences. (284 aa)    
Predicted Functional Partners:
fixU
Protein FixU homolog,NifT/FixU; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
    0.968
nifZ
NifZ, nitrogenase P-cluster assembly; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
    0.948
XM1_3933
Ferredoxin; Function of homologous gene experimentally demonstrated in an other organism; carrier.
 
    0.921
nifB
FeMo cofactor biosynthesis protein NifB; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
    0.919
XM1_3944
Conserved protein of unknown function(containing probable nitrogen fixation protein domain,7-149); Homologs of previously reported genes of unknown function.
 
  
 0.851
nifW
Nitrogenase-stabilizing/protective protein NifW; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
    0.834
nifE
Nitrogenase iron-molybdenum cofactor biosynthesis protein NifE; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.825
yfhL
Ferredoxin (4Fe-4S cluster-containing protein) (fdx-like); Function of homologous gene experimentally demonstrated in an other organism; carrier.
 
     0.795
nifX
Nitrogen fixation protein NifX; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
    0.789
XM1_1695
Conserved protein of unknown function(Putative nitrogen fixation protein,1-62); Homologs of previously reported genes of unknown function.
  
    0.786
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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