STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3970Protein of unknown function; No homology to any previously reported sequences. (109 aa)    
Predicted Functional Partners:
XM1_4215
Homologs of previously reported genes of unknown function; Belongs to the UPF0262 family.
  
     0.699
XM1_1963
Homologs of previously reported genes of unknown function.
  
     0.643
atpD
Membrane-bound ATP synthase, F1 sector, beta-subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.622
atpG
ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
    
   0.622
atpA
F1 sector of membrane-bound ATP synthase, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.622
XM1_3969
Uncharacterized protein; Homologs of previously reported genes of unknown function.
       0.618
XM1_1539
Putative ATPase MipZ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.617
XM1_1255
Homologs of previously reported genes of unknown function.
  
     0.562
XM1_1959
Homologs of previously reported genes of unknown function.
  
     0.534
XM1_0556
Homologs of previously reported genes of unknown function.
  
     0.527
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.